PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013927.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 229aa    MW: 24355 Da    PI: 4.6379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013927.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.8e-1662111155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+G+r ++ +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+ +l+g
  Pbr013927.1  62 PVYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTYPKPEMAAAAYDVAAIALKG 111
                  68****9.55.6*********843...5***********************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.40149119IPR001471AP2/ERF domain
PfamPF008473.5E-962111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-2563120IPR001471AP2/ERF domain
SMARTSM003801.1E-2563125IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1763121IPR016177DNA-binding domain
PRINTSPR003672.6E-56475IPR001471AP2/ERF domain
CDDcd000189.39E-1564121No hitNo description
PRINTSPR003672.6E-5101121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MADPYSNVPK TPIDQPTTTS NPNPFIQIPP TLPNPPTSTL PDDSSSSSSP RGSTLGSSRR  60
HPVYRGIRCR SGKWVSEIRE PRKTTRIWLG TYPKPEMAAA AYDVAAIALK GPDTPLNFPN  120
SILTYPIPAS SAASDIRSAA ARAAQSRADM LAPQERESGG RSAPSGVDNE GGGGGVVSQQ  180
QEEYMDEEEL LNMPNLLVDM AEGMLVSPPR ISSDNSPGNS DGENLWSY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324400.0GU732440.1 Malus x domestica AP2 domain class transcription factor (AP2D16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009371279.11e-164PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-52ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLD5L1001e-125D5L100_MALDO; AP2 domain class transcription factor
STRINGVIT_16s0100g00400.t019e-65(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-40ERF family protein